Detailed information of SNP:
|
SNP ID:
sf0413426516(Gbrowse)
Chromosome: chr04 Position: 13426516 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 93.61% | 6.39% |
| All Indica | 791 | 95.32% | 4.68% |
| All Japonica | 495 | 92.53% | 7.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 92.37% | 7.63% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413426516 | G->A | LOC_Os04g23500(LOC_Os04g23500.1) | INTRON |