Detailed information of SNP:
|
SNP ID:
sf0413426663(Gbrowse)
Chromosome: chr04 Position: 13426663 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 92.96% | 7.04% |
| All Indica | 789 | 93.54% | 6.46% |
| All Japonica | 495 | 92.93% | 7.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 89.13% | 10.87% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413426663 | G->A | LOC_Os04g23500(LOC_Os04g23500.1) | INTRON |