Detailed information of SNP:
|
SNP ID:
sf0413430949(Gbrowse)
Chromosome: chr04 Position: 13430949 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.54% | 9.46% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413430949 | G->A | INTERGENIC | None |