Detailed information of SNP:
|
SNP ID:
sf0413558786(Gbrowse)
Chromosome: chr04 Position: 13558786 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1227 | 95.11% | 4.89% |
| All Indica | 616 | 99.68% | 0.32% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 100.00% | 0.00% |
| Indica II | 110 | 98.18% | 1.82% |
| Indica Intermediate | 162 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 90.91% | 9.09% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413558786 | C->A | LOC_Os04g23720(LOC_Os04g23720.1) | Non-Synonymous SNP |