Detailed information of SNP:
|
SNP ID:
sf0413659361(Gbrowse)
Chromosome: chr04 Position: 13659361 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.92% | 38.08% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 8.65% | 91.35% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413659361 | C->T | INTERGENIC | None |