Detailed information of SNP:
|
SNP ID:
sf0413694006(Gbrowse)
Chromosome: chr04 Position: 13694006 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.99% | 40.01% |
| All Indica | 797 | 43.54% | 56.46% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 212 | 29.25% | 70.75% |
| Indica Intermediate | 210 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413694006 | C->T | INTERGENIC | None |