Detailed information of SNP:
|
SNP ID:
sf0413699859(Gbrowse)
Chromosome: chr04 Position: 13699859 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 94.32% | 5.68% |
| All Indica | 792 | 100.00% | 0.00% |
| All Japonica | 478 | 84.31% | 15.69% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 78.82% | 21.18% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413699859 | C->T | INTERGENIC | None |