Detailed information of SNP:
|
SNP ID:
sf0413743254(Gbrowse)
Chromosome: chr04 Position: 13743254 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 92.57% | 7.43% |
| All Indica | 728 | 86.68% | 13.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 89.02% | 10.98% |
| Indica II | 185 | 77.84% | 22.16% |
| Indica Intermediate | 197 | 90.86% | 9.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413743254 | T->C | LOC_Os04g24080(LOC_Os04g24080.1) | INTRON |