Detailed information of SNP:
|
SNP ID:
sf0413750326(Gbrowse)
Chromosome: chr04 Position: 13750326 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 88.29% | 11.71% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413750326 | C->G | INTERGENIC | None |