Detailed information of SNP:
|
SNP ID:
sf0413753556(Gbrowse)
Chromosome: chr04 Position: 13753556 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.45% | 43.55% |
| All Indica | 799 | 38.92% | 61.08% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 51.20% | 48.80% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413753556 | T->G | LOC_Os04g24100(LOC_Os04g24100.1) | Non-Synonymous SNP |