Detailed information of SNP:
|
SNP ID:
sf0413753905(Gbrowse)
Chromosome: chr04 Position: 13753905 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 93.43% | 6.57% |
| All Indica | 768 | 89.71% | 10.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 358 | 89.11% | 10.89% |
| Indica II | 207 | 87.92% | 12.08% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413753905 | C->T | LOC_Os04g24100(LOC_Os04g24100.1) | INTRON |