Detailed information of SNP:
|
SNP ID:
sf0413755690(Gbrowse)
Chromosome: chr04 Position: 13755690 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 92.17% | 7.83% |
| All Indica | 785 | 92.23% | 7.77% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 199 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413755690 | A->G | LOC_Os04g24100(LOC_Os04g24100.1) | Synonymous |