Detailed information of SNP:
|
SNP ID:
sf0413756437(Gbrowse)
Chromosome: chr04 Position: 13756437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 97.13% | 2.87% |
| All Indica | 791 | 98.23% | 1.77% |
| All Japonica | 484 | 96.28% | 3.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 97.56% | 2.44% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 99.09% | 0.91% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413756437 | G->A | LOC_Os04g24100(LOC_Os04g24100.1) | Synonymous |