Detailed information of SNP:
|
SNP ID:
sf0413759462(Gbrowse)
Chromosome: chr04 Position: 13759462 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.66% | 43.34% |
| All Indica | 799 | 38.80% | 61.20% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 48.80% | 51.20% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413759462 | A->G | INTERGENIC | None |