Detailed information of SNP:
|
SNP ID:
sf0413760862(Gbrowse)
Chromosome: chr04 Position: 13760862 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.59% | 7.41% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413760862 | G->A | INTERGENIC | None |