Detailed information of SNP:
|
SNP ID:
sf0413761411(Gbrowse)
Chromosome: chr04 Position: 13761411 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 93.10% | 6.90% |
| All Indica | 774 | 93.41% | 6.59% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 92.18% | 7.82% |
| Indica II | 192 | 92.19% | 7.81% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413761411 | T->C | INTERGENIC | None |