Detailed information of SNP:
|
SNP ID:
sf0413761973(Gbrowse)
Chromosome: chr04 Position: 13761973 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.82% | 25.18% |
| All Indica | 798 | 62.66% | 37.34% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 53.87% | 46.13% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413761973 | C->T | INTERGENIC | None |