Detailed information of SNP:
|
SNP ID:
sf0413835598(Gbrowse)
Chromosome: chr04 Position: 13835598 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.89% | 8.11% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413835598 | C->T | LOC_Os04g24190(LOC_Os04g24190.1) | INTRON |