Detailed information of SNP:
|
SNP ID:
sf0413853117(Gbrowse)
Chromosome: chr04 Position: 13853117 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 89.87% | 10.13% |
| All Indica | 791 | 90.01% | 9.99% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 207 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413853117 | C->T | INTERGENIC | None |