Detailed information of SNP:
|
SNP ID:
sf0413861844(Gbrowse)
Chromosome: chr04 Position: 13861844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 96.08% | 3.92% |
| All Indica | 661 | 92.74% | 7.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 288 | 95.49% | 4.51% |
| Indica II | 194 | 87.63% | 12.37% |
| Indica Intermediate | 179 | 93.85% | 6.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413861844 | G->A | INTERGENIC | None |