Detailed information of SNP:
|
SNP ID:
sf0413875142(Gbrowse)
Chromosome: chr04 Position: 13875142 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1348 | 83.01% | 16.99% |
| All Indica | 763 | 72.48% | 27.52% |
| All Japonica | 466 | 98.71% | 1.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 86.30% | 13.70% |
| Indica II | 194 | 43.81% | 56.19% |
| Indica Intermediate | 204 | 75.00% | 25.00% |
| Temperate Japonica | 325 | 99.38% | 0.62% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413875142 | T->C | INTERGENIC | None |