Detailed information of SNP:
|
SNP ID:
sf0413897020(Gbrowse)
Chromosome: chr04 Position: 13897020 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 61.06% | 38.94% |
| All Indica | 792 | 44.44% | 55.56% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 54.01% | 45.99% |
| Indica II | 210 | 26.67% | 73.33% |
| Indica Intermediate | 208 | 45.19% | 54.81% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413897020 | A->G | LOC_Os04g24274(LOC_Os04g24274.1) | INTRON |