Detailed information of SNP:
|
SNP ID:
sf0413972147(Gbrowse)
Chromosome: chr04 Position: 13972147 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 91.01% | 8.99% |
| All Indica | 777 | 90.99% | 9.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 202 | 78.71% | 21.29% |
| Indica Intermediate | 203 | 88.67% | 11.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413972147 | C->G | INTERGENIC | None |