Detailed information of SNP:
|
SNP ID:
sf0413978960(Gbrowse)
Chromosome: chr04 Position: 13978960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 82.24% | 17.76% |
| All Indica | 793 | 73.27% | 26.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 210 | 61.43% | 38.57% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413978960 | G->A | INTERGENIC | None |