Detailed information of SNP:
|
SNP ID:
sf0413997153(Gbrowse)
Chromosome: chr04 Position: 13997153 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 80.06% | 19.94% |
| All Indica | 782 | 72.76% | 27.24% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 198 | 52.02% | 47.98% |
| Indica Intermediate | 209 | 66.51% | 33.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413997153 | T->C | INTERGENIC | None |