Detailed information of SNP:
|
SNP ID:
sf0414004051(Gbrowse)
Chromosome: chr04 Position: 14004051 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 76.16% | 23.84% |
| All Indica | 760 | 57.11% | 42.89% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 347 | 38.33% | 61.67% |
| Indica II | 211 | 73.46% | 26.54% |
| Indica Intermediate | 202 | 72.28% | 27.72% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414004051 | C->T | LOC_Os04g24430(LOC_Os04g24430.1) | UTR_3_PRIME |