Detailed information of SNP:
|
SNP ID:
sf0414012711(Gbrowse)
Chromosome: chr04 Position: 14012711 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 82.07% | 17.93% |
| All Indica | 792 | 73.23% | 26.77% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 211 | 61.61% | 38.39% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414012711 | G->A | LOC_Os04g24450(LOC_Os04g24450.1) | INTRON |