Detailed information of SNP:
|
SNP ID:
sf0414041626(Gbrowse)
Chromosome: chr04 Position: 14041626 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 86.21% | 13.79% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414041626 | G->A | LOC_Os04g24500(LOC_Os04g24500.1) | INTRON |