Detailed information of SNP:
|
SNP ID:
sf0414048509(Gbrowse)
Chromosome: chr04 Position: 14048509 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.07% | 25.93% |
| All Indica | 799 | 62.70% | 37.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414048509 | A->T | LOC_Os04g24510(LOC_Os04g24510.1) | Non-Synonymous SNP |