Detailed information of SNP:
|
SNP ID:
sf0414048743(Gbrowse)
Chromosome: chr04 Position: 14048743 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.92% | 38.08% |
| All Indica | 799 | 56.07% | 43.93% |
| All Japonica | 496 | 68.35% | 31.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 334 | 91.32% | 8.68% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414048743 | G->A | LOC_Os04g24510(LOC_Os04g24510.1) | Non-Synonymous SNP |