Detailed information of SNP:
SNP ID:
sf0414049002(Gbrowse)
Chromosome: chr04 Position: 14049002 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 58.28% | 41.72% |
All Indica | 799 | 55.19% | 44.81% |
All Japonica | 497 | 71.83% | 28.17% |
Aus | 67 | 14.93% | 85.07% |
Indica I | 375 | 76.00% | 24.00% |
Indica II | 213 | 15.02% | 84.98% |
Indica Intermediate | 211 | 58.77% | 41.23% |
Temperate Japonica | 335 | 94.93% | 5.07% |
Tropical Japonica | 94 | 9.57% | 90.43% |
Japonica Intermediate | 68 | 44.12% | 55.88% |
Group VI/Aromatic | 14 | 35.71% | 64.29% |
Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0414049002 | A->C | LOC_Os04g24510(LOC_Os04g24510.1) | INTRON |