Detailed information of SNP:



SNP ID: sf0414049002(Gbrowse)

Chromosome: chr04

Position: 14049002
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1419 58.28% 41.72%
All Indica799 55.19% 44.81%
All Japonica497 71.83% 28.17%
Aus67 14.93% 85.07%
Indica I375 76.00% 24.00%
Indica II213 15.02% 84.98%
Indica Intermediate211 58.77% 41.23%
Temperate Japonica335 94.93% 5.07%
Tropical Japonica94 9.57% 90.43%
Japonica Intermediate68 44.12% 55.88%
Group VI/Aromatic14 35.71% 64.29%
Intermediate42 33.33% 66.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414049002 A->C LOC_Os04g24510(LOC_Os04g24510.1) INTRON