Detailed information of SNP:
|
SNP ID:
sf0414053702(Gbrowse)
Chromosome: chr04 Position: 14053702 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 67.25% | 32.75% |
| All Indica | 798 | 52.13% | 47.87% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 46.79% | 53.21% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414053702 | T->C | INTERGENIC | None |