Detailed information of SNP:
|
SNP ID:
sf0414089219(Gbrowse)
Chromosome: chr04 Position: 14089219 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.81% | 33.19% |
| All Indica | 796 | 51.26% | 48.74% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 45.87% | 54.13% |
| Indica II | 210 | 70.00% | 30.00% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414089219 | C->T | INTERGENIC | None |