Detailed information of SNP:
|
SNP ID:
sf0414089332(Gbrowse)
Chromosome: chr04 Position: 14089332 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 88.69% | 11.31% |
| All Indica | 797 | 90.21% | 9.79% |
| All Japonica | 495 | 84.04% | 15.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 25.00% | 75.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414089332 | G->A | INTERGENIC | None |