Detailed information of SNP:
|
SNP ID:
sf0414105113(Gbrowse)
Chromosome: chr04 Position: 14105113 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 94.62% | 5.38% |
| All Indica | 704 | 90.34% | 9.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 96.93% | 3.07% |
| Indica II | 163 | 77.91% | 22.09% |
| Indica Intermediate | 183 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414105113 | C->T | INTERGENIC | None |