Detailed information of SNP:
|
SNP ID:
sf0414105495(Gbrowse)
Chromosome: chr04 Position: 14105495 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 61.49% | 38.51% |
| All Indica | 792 | 78.79% | 21.21% |
| All Japonica | 494 | 29.76% | 70.24% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 372 | 65.32% | 34.68% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414105495 | T->C | INTERGENIC | None |