Detailed information of SNP:
|
SNP ID:
sf0414118415(Gbrowse)
Chromosome: chr04 Position: 14118415 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 73.89% | 26.11% |
| All Indica | 775 | 62.71% | 37.29% |
| All Japonica | 496 | 88.71% | 11.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 55.92% | 44.08% |
| Indica II | 209 | 85.17% | 14.83% |
| Indica Intermediate | 203 | 51.72% | 48.28% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414118415 | C->T | INTERGENIC | None |