Detailed information of SNP:
|
SNP ID:
sf0414118618(Gbrowse)
Chromosome: chr04 Position: 14118618 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 61.06% | 38.94% |
| All Indica | 790 | 78.35% | 21.65% |
| All Japonica | 497 | 28.97% | 71.03% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 368 | 62.23% | 37.77% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414118618 | T->C | INTERGENIC | None |