Detailed information of SNP:
|
SNP ID:
sf0414161605(Gbrowse)
Chromosome: chr04 Position: 14161605 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 83.62% | 16.38% |
| All Indica | 718 | 82.73% | 17.27% |
| All Japonica | 429 | 82.98% | 17.02% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 328 | 82.62% | 17.38% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 182 | 73.63% | 26.37% |
| Temperate Japonica | 326 | 96.93% | 3.07% |
| Tropical Japonica | 46 | 17.39% | 82.61% |
| Japonica Intermediate | 57 | 56.14% | 43.86% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414161605 | C->T | LOC_Os04g24690(LOC_Os04g24690.1) | Non-Synonymous SNP |