Detailed information of SNP:



SNP ID: sf0414166742(Gbrowse)

Chromosome: chr04

Position: 14166742
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1303 81.20% 18.80%
All Indica724 82.18% 17.82%
All Japonica460 78.26% 21.74%
Aus67 95.52% 4.48%
Indica I329 83.59% 16.41%
Indica II205 84.39% 15.61%
Indica Intermediate190 77.37% 22.63%
Temperate Japonica325 97.23% 2.77%
Tropical Japonica86 11.63% 88.37%
Japonica Intermediate49 69.39% 30.61%
Group VI/Aromatic13 61.54% 38.46%
Intermediate39 79.49% 20.51%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414166742 T->C LOC_Os04g24690(LOC_Os04g24690.1) Non-Synonymous SNP