Detailed information of SNP:
|
SNP ID:
sf0414166742(Gbrowse)
Chromosome: chr04 Position: 14166742 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1303 | 81.20% | 18.80% |
| All Indica | 724 | 82.18% | 17.82% |
| All Japonica | 460 | 78.26% | 21.74% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 329 | 83.59% | 16.41% |
| Indica II | 205 | 84.39% | 15.61% |
| Indica Intermediate | 190 | 77.37% | 22.63% |
| Temperate Japonica | 325 | 97.23% | 2.77% |
| Tropical Japonica | 86 | 11.63% | 88.37% |
| Japonica Intermediate | 49 | 69.39% | 30.61% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414166742 | T->C | LOC_Os04g24690(LOC_Os04g24690.1) | Non-Synonymous SNP |