Detailed information of SNP:
|
SNP ID:
sf0414166949(Gbrowse)
Chromosome: chr04 Position: 14166949 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 88.49% | 11.51% |
| All Indica | 734 | 91.69% | 8.31% |
| All Japonica | 461 | 82.00% | 18.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 331 | 93.05% | 6.95% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 193 | 86.01% | 13.99% |
| Temperate Japonica | 331 | 97.58% | 2.42% |
| Tropical Japonica | 82 | 21.95% | 78.05% |
| Japonica Intermediate | 48 | 77.08% | 22.92% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414166949 | C->T | LOC_Os04g24690(LOC_Os04g24690.1) | Non-Synonymous SNP |