Detailed information of SNP:
|
SNP ID:
sf0414167656(Gbrowse)
Chromosome: chr04 Position: 14167656 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 70.95% | 29.05% |
| All Indica | 770 | 68.44% | 31.56% |
| All Japonica | 492 | 71.34% | 28.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 353 | 65.44% | 34.56% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 204 | 56.37% | 43.63% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414167656 | C->T | INTERGENIC | None |