Detailed information of SNP:



SNP ID: sf0414167656(Gbrowse)

Chromosome: chr04

Position: 14167656
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1384 70.95% 29.05%
All Indica770 68.44% 31.56%
All Japonica492 71.34% 28.66%
Aus67 98.51% 1.49%
Indica I353 65.44% 34.56%
Indica II213 84.98% 15.02%
Indica Intermediate204 56.37% 43.63%
Temperate Japonica333 94.89% 5.11%
Tropical Japonica93 4.30% 95.70%
Japonica Intermediate66 46.97% 53.03%
Group VI/Aromatic14 50.00% 50.00%
Intermediate41 75.61% 24.39%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414167656 C->T INTERGENIC None