Detailed information of SNP:
|
SNP ID:
sf0414167945(Gbrowse)
Chromosome: chr04 Position: 14167945 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 95.59% | 4.41% |
| All Indica | 756 | 97.75% | 2.25% |
| All Japonica | 441 | 91.84% | 8.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 97.71% | 2.29% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 200 | 98.00% | 2.00% |
| Temperate Japonica | 328 | 99.09% | 0.91% |
| Tropical Japonica | 62 | 58.06% | 41.94% |
| Japonica Intermediate | 51 | 86.27% | 13.73% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414167945 | C->A | INTERGENIC | None |