Detailed information of SNP:
|
SNP ID:
sf0414181409(Gbrowse)
Chromosome: chr04 Position: 14181409 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.31% | 45.69% |
| All Indica | 797 | 73.27% | 26.73% |
| All Japonica | 497 | 30.38% | 69.62% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 65.78% | 34.22% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414181409 | G->A | INTERGENIC | None |