Detailed information of SNP:
|
SNP ID:
sf0414183817(Gbrowse)
Chromosome: chr04 Position: 14183817 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 96.18% | 3.82% |
| All Indica | 780 | 96.28% | 3.72% |
| All Japonica | 476 | 98.11% | 1.89% |
| Aus | 52 | 78.85% | 21.15% |
| Indica I | 366 | 97.54% | 2.46% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 77 | 90.91% | 9.09% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414183817 | T->C | LOC_Os04g24730(LOC_Os04g24730.1) | Synonymous |