Detailed information of SNP:
|
SNP ID:
sf0414188435(Gbrowse)
Chromosome: chr04 Position: 14188435 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 85.79% | 14.21% |
| All Indica | 793 | 95.71% | 4.29% |
| All Japonica | 470 | 81.70% | 18.30% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 312 | 73.40% | 26.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414188435 | T->C | LOC_Os04g24730(LOC_Os04g24730.1) | INTRON |