Detailed information of SNP:
|
SNP ID:
sf0414191866(Gbrowse)
Chromosome: chr04 Position: 14191866 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 65.25% | 34.75% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 492 | 32.11% | 67.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 67.65% | 32.35% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 330 | 8.18% | 91.82% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414191866 | T->G | INTERGENIC | None |