Detailed information of SNP:
|
SNP ID:
sf0414192290(Gbrowse)
Chromosome: chr04 Position: 14192290 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 67.11% | 32.89% |
| All Indica | 797 | 62.48% | 37.52% |
| All Japonica | 495 | 70.30% | 29.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 57.49% | 42.51% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414192290 | A->C | INTERGENIC | None |