Detailed information of SNP:
|
SNP ID:
sf0414193024(Gbrowse)
Chromosome: chr04 Position: 14193024 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 64.50% | 35.50% |
| All Indica | 798 | 81.95% | 18.05% |
| All Japonica | 494 | 30.97% | 69.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 332 | 6.63% | 93.37% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414193024 | A->G | INTERGENIC | None |