Detailed information of SNP:
|
SNP ID:
sf0414193573(Gbrowse)
Chromosome: chr04 Position: 14193573 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 74.77% | 25.23% |
| All Indica | 793 | 64.69% | 35.31% |
| All Japonica | 492 | 88.01% | 11.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 59.63% | 40.37% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 209 | 52.15% | 47.85% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414193573 | C->A | INTERGENIC | None |